| Plasmid | Product | System | Ind | Res | Source |
|---|---|---|---|---|---|
| pVS52 | CheZ-5G-YFP | pBAD33 | ara | cam | |
| pVS149 | CheY-5G-mRFP1 | pTrc99a | IPTG | amp | |
| pSJAB12 | CheZ-5G-YFP/CheY-5G-mRFP1 | PTrc99a | IPTG | amp | This work |
| pSJAB106 | CheZ-5G-YFP/CheY-5G-mRFP1¶ | PTrc99a | IPTG | amp | This work |
| pVS91 | CheB† | pTrc99a | ara | cam | |
| pVS97 | CheB-D56E‡ | pBAD33 | ara | cam | |
| pVS112 | CheBc§ | pBAD33 | ara | cam | V. Sourjik |
| pSJAB 122 | CheBc-GS4G-mVenus | pBAD33 | ara | cam | This work |
| pSJAB 123 | CheB(D56E)-GS4G-mVenus | pBAD33 | ara | cam | This work |
| pSJAB 124 | CheB-GS4G-mVenus | pBAD33 | ara | cam | This work |
| pZR 1 | FliC* | pKG116 | NaSal | cam | This work |
| pPA114 Tsr | Tsr | pPA114 | NaSal | cam |
¶Contains a A206K mutation to enforce monomerity..
†expresses WT CheB.
‡carries a point mutation D56E in CheB.
§expresses only residues 147–349 of CheB, preceded by a start codon (Met).
*expresses sticky FliC filament (
| Plasmid # | Plasmid name | Description | Bacterial selection | Reference |
|---|---|---|---|---|
| 8 | pRS316 | pRS316, cen, Ura3 | Amp | |
| 10 | HA-Fzo1 on pRS316 | HA-Fzo1 on pRS316, Fzo1 prom, cen, Ura3 | Amp | |
| 14 | HA-Fzo1-K464R on pRS316 | HA-Fzo1K464R on pRS316, Fzo1 prom, cen, Ura3 | Amp | |
| 58 | YEplac181 | YEplac181, 2µ, Leu2 | Amp | |
| 59 | Ubp2-Flag on YEplac181 | Ubp2-Flag on YEplac181, Adh1 prom, 2µ, Leu2 | Amp | |
| 60 | Ubp2-C745S-Flag on YEplac181 | Ubp2C745S-Flag on YEplac181, Adh1 prom, 2µ, Leu2 | Amp | |
| 61 | Ubp12-Flag on YEplac181 | Ubp2-Flag on YEplac181, Adh1 prom, 2µ, Leu2 | Amp | |
| 62 | Ubp12-C372S-Flag on | Ubp2C372S-Flag on YEplac181, Adh1 prom, 2µ, Leu2 | Amp | |
| 63 | YEplac195 | YEplac195, 2µ, Ura3 | Amp | |
| 65 | Ubp12C372S on YEplac195 | Ubp12C372S (non-tagged) on YEplac195, 2µ, Ura3 | Amp | this study |
| 70 | mt-GFP on pYX142 | mt-GFP on pYX142, cen, Leu2 | Amp | |
| 75 | Cdc48 wt on pRS313 | Cdc48 wt on pRS313, cen, His3 | Amp | |
| 79 | pRS313 | pRS313, cen, His3 | Amp | |
| 150 | Cdc48-A547T on pRS313 | Cdc48A547T on pRS313, cen, His3 | Amp | this study |
| 341 | Ub on pKT10 | Ub on pK10, 2µ, Ura3 | Amp | |
| 342 | Ub-K48R on pKT10 | UbK48R on pK10, 2µ, Ura3 | Amp | |
| 343 | Ub-K63R on pKT10 | UbK63R on pK10, 2µ, Ura3 | Amp | |
| 344 | Ub-K48R,K63R on pKT10 | UbK48R,K63R on pK10, 2µ, Ura3 | Amp | |
| 356 | Myc-Ub on pRS426 | pCup1-Myc-Ub on pRS426, 2µ, Ura3 | Amp | |
| 375 | pRS426 | pRS426, 2µ, Ura3 | Amp |
| Plasmid | Description | Source |
|---|---|---|
| pMQ30 | 7.5 kb mobilizable vector; oriT, sacB, GmR. | |
| pAKN69 | Contains mini-Tn7(Gm)PA1/04/03::eyfp fusion. | |
| pLD2722 | GmR, TetR flanked by Flp recombinase target (FRT) sites to resolve out resistance casettes. | this study |
| pFLP2 | Site-specific excision vector with cI857-controlled FLP recombinase encoding sequence, sacB, ApR. | |
| pLD1852 | ∆ | this study |
| pLD1610 | ∆ | this study |
| pLD1616 | ∆ | this study |
| pLD1264 | ∆ | this study |
| pLD1929 | ∆ | this study |
| pLD2791 | ∆ | this study |
| pLD1853 | Full genomic sequence of | this study |
| pLD1966 | ∆ | this study |
| pLD1967 | ∆ | this study |
| pLD2044 | ∆ | this study |
| pLD2777 | PCR-amplified | this study |
| pLD2778 | PCR-amplified | this study |
| pLD2779 | PCR-amplified | this study |
| Plasmid | Description | Source or reference |
|---|---|---|
| YCplac111 | sc | ( |
| YEplac181 | hc | ( |
| YCplac22 | sc | ( |
| p3390/pDSO9 | sc | ( |
| p5633 | sc | This study |
| p5635 | sc | This study |
| p5638 | sc | This study |
| p5637 | sc | This study |
| p5640 | sc | This study |
| p5642 | sc | This study |
| p5644 | sc | This study |
| pDH469 | sc | This study |
| pDH468 | sc | This study |
| pDH481 | sc | This study |
| pDH471 | sc | This study |
| pDH470 | sc | This study |
| pDH473 | sc | This study |
| pDH472 | sc | This study |
| pDH475 | sc | This study |
| pDH474 | sc | This study |
| pDH478 | sc | This study |
| pDH476 | sc | This study |
| p3400/pDSO23 | hc | ( |
| pPMB167 | hc | This study |
| pPMB168 | hc | This study |
| pPMB169 | hc | This study |
| pPMB170 | hc | This study |
| p4281/YCpTIF5-G31R-W | sc | ( |
| p4280/YCpSUI3-S264Y-W | sc | ( |
| p367 | sc | ( |
| p391 | sc | ( |
| p180 | sc | ( |
| pPMB24 | sc | ( |
| pPMB25 | sc | ( |
| pPMB28 | sc | ( |
| pC3502 | sc | ( |
| pC4466 | sc | ( |
| pC3503 | sc | ( |
| pC3505 | sc | ( |
| pTYB2-TIF11 | ( | |
| p6013 | This study | |
| p6015 | This study | |
| pRaugFFuug | Dual luciferase reporter | ( |
| pRaugFFuug | Dual luciferase reporter | ( |
| Plasmid | Description | Reference or source |
|---|---|---|
| pFL38 | CEN-ARS (URA3) | ( |
| pFL36 | CEN-ARS (LEU2) | ( |
| p416 GAL1 | CEN-ARS GAL1p (URA3) | ( |
| pJOD10 | p416 GAL1p-GAP1-GFP (URA3) | ( |
| pCJ038 | p416 GAL1p -GAP1(K9R,K16R)-GFP (URA3) | ( |
| pMA065 | p416 GAL1p -GAP1-126-GFP (URA3) | ( |
| pMA091 | p416 GAL1p -GAP1-126-K9R,K16R-GFP (URA3) | ( |
| pCH500 | CEN-ARS-GAP1 (URA3) | ( |
| pHcGAP1 | YEp-HcGAP1 (URA3) | ( |
| pES103 | YEp-HA-NPR1 (LEU2) | This study |
| pAS103 | YEp-HA-NPR1 (URA3) | ( |
| pCJ315 | CEN-ARS (LEU2-HIS3-LYS2) | Lab collection |
| pMYC008 | YCp-AGP1p-LACZ (HIS3 TRP1 LEU2) | Lab collection |
| pES154 | YCp-AGP1p-LACZ (HIS3 TRP1) | This study |
| pHl-U | YEp-ADH1p-pHluorin (URA3) | ( |
| pHl-I | YCp-loxP-kanMX-loxP-GPD1p-pHluorin (URA3) | ( |
| pCJ366 | YEp (TRP1-LEU2-HIS3) | Lab collection |
| pPS15-P1 | YCp-(Sc)PMA1 (LEU2) | ( |
| pPMA4882ochre | YEp-PMA1p-(Np)PMA4882ochre (LEU2) | ( |
| Plasmid | Relevant genotype/markers | Source |
|---|---|---|
| pGM074 | pKASBAR-kan ( | G. McVicker |
| pSNAP-tag (T7)−2 | New England | |
| pOB | pGEM3Zf(+) cloning vector containing the erythromycin resistance cassette (amp, ery) | ( |
| pAISH | TetR derivative of pMUTIN4 | ( |
| pKASBAR-EzrA-eYFP | pKASBAR-kan containing | This study |
| pKASBAR-EzrA-meYFP | pKASBAR-kan containing | This study |
| pKASBAR-EzrA-GFP | pKASBAR-kan containing | This study |
| pKASBAR-EzrA-SNAP | pKASBAR-kan containing | This study |
| pOB- | pOB containing the | This study |
| pSS26b | pUC19 encoding | Covalys |
| pSS26bFtsZ-C | pSS26b containing | This study |
| pCQ11 | ( | |
| pCQ11-FtsZ-SNAP | pCQ11 derivative containing | This study |
| pCQ11-FtsZ-eYFP | pCQ11-FtsZ-SNAP with | This study |
Genes are human unless otherwise stated
| Plasmid | Backbone | Insert | Ref |
|---|---|---|---|
| APX1-GFP1-10 | APX1 | super-folder GFP | This study |
| CDV-hyPBase | pigg | ( | |
| NES-EGFP-P4M × 1 | pEGFP-C1 | This study | |
| FKBP-mCherry | pmCherry-N1 | This study | |
| SAC1∆TMD-FKBP-mCherry | pmCherry-N1 | This study | |
| SAC1C389S∆TMD-FKBP-mCherry | pmCherry-N1 | This study | |
| iRFP-Sec61β | piRFP-C1 | iRFP: | This study |
| mKO-ManII | pmKO-N1 | Kusabira Orange 2: | Tamas Balla |
| mCherry-VAPB | pmCherry-C1 | mCherry: | This study |
| mCherry-MAPPER | pmCherry-C1 | mCherry:MAPPER | ( |
| EGFP-MAPPER | pEGFP-C1 | EGFP:MAPPER | ( |
| GFP-ORP5 | pEGFP-C1 | EGFP: | ( |
| GFP-E-Syt2 | pEGFP-C1 | EGFP: | ( |
| EGFP-SAC1 | pEGFP-C1 | EGFP: | ( |
| mEmerald-N16-Calreticulin | pmEmerald-N1 | mEmerald: | Michael Davidson (Addgene plasmid #54023) |
| GFP-Sec61β | pAcGFP-C1-Sec61β | ( | |
| EGFP-E-Syt1 | pEGFP-C1 | EGFP- | ( |
| EGFP-STIM1 | pEGFP-C1 | ( | |
| EGFP-Nir2 | pEGFP-N1 | EGFP: | ( |
| EGFP-P4M × 2 | pEGFP-C1 | EGFP: | ( |
| Lyn11-FRB-iRFP | piRFP-N1 | ( | |
| mCherry-FKBP | pmCherry-C1 | mCherry: | ( |
| mCherry-FKBP-SAC1 | pmCherry-C1 | mCherry: | This study |
| mCherry-FKBP-SAC1C389S | pmCherry-C1 | mCherry: | This study |
| mCherry-SAC1-FKBP | pmCherry-C1 | mCherry: | This study |
| mCherry-SAC1C389S-FKBP | pmCherry-C1 | mCherry: | This study |
| SAC1∆452-587-FKBP-mCherry | pmCherry-N1 | SACM1L(1-451): | This study |
| mCherry-FKBP-SAC1∆TMD | pmCherry-C1 | mCherry: | This study |
| mCherry-FKBP-SAC1-HLx2 | pmCherry-C1 | mCherry: | This study |
| mCherry-FKBP-SAC1-HLx4 | pmCherry-C1 | mCherry: | This study |
| mCherry-FKBP-SAC1-HLx6 | pmCherry-C1 | mCherry: | This study |
| mCherry-FKBP-SAC1-HLx8 | pmCherry-C1 | mCherry: | This study |
| mCherry-FKBP-SAC1-HLx10 | pmCherry-C1 | mCherry: | This study |
| mCherry-FKBP-SAC1C389S-HLx8 | pmCherry-C1 | mCherry: | This study |
| mCherry | pmCherry-C1 | mCherry | ( |
| mCherry-SAC1 | pmCherry-C1 | mCherry: | ( |
| mCherry-SAC1-HLx8 | pmCherry-C1 | mCherryL | This study |
| mCherry-SAC1C389S-HLx8 | pmCherry-C1 | mCherry: | This study |
| mTagBFP2-FKBP-CYB5Atail | pmTagBFP2-C1 | mTagBFP2: | This study |
| Name | Description | Vector-Promoter | Addgene |
|---|---|---|---|
| P1 | HA-β2AR-NNES-NanoLuc-15aa linker-AsLOV2(V416L) | pAAV-CMV | 125224 |
| P2 | gLuc sp-NanoLuc-HA-β2AR-NNES-AsLOV2(V416L) | pAAV-CMV | 125225 |
| P3 | mCherry-GSGS linker-Zdk1 | pAAV-CMV | 125226 |
| P4 | DRD1-NNES-eLOV-TEVcs-Flag-Gal4-V5 | pAAV-CMV | 125227 |
| P5 | AVPR2-NNES-eLOV-TEVcs-Flag-Gal4-V5 | pAAV-CMV | 104844 |
| P6 | β2AR-NNES-eLOV-TEVcs-Flag-Gal4-V5 | pAAV-CMV | 104841 |
| P7 | NanoLuc-15aa linker-βarrestin2-HA-GS linker-TEVp | pAAV-CMV | 125228 |
| P8 | UAS-Citrine | pAAV-UAS | 104839 |
| P9 | βarrestin2-HA-GS linker-TEVp | pAAV-CMV | 104845 |
| P10 | UAS-FLuc | pAAV-UAS | 104840 |
| P11 | IgK sp-HA-CD4-10aa linker-CIBN-NNES-NanoLuc | pAAV-CMV | 125229 |
| P12 | gLuc sp-NanoLuc-HA-oβ2AR-TS-eLOV-TEVcs-Flag-Gal4 | pLX208-CMV | 125230 |
| P13 | NanoLuc-15aa linker-βarrestin2-HA-GS linker-TEVp | pLX208-CMV | 125231 |
| P14 | UAS-Citrine | pFPGW-UAS | 125232 |
| P15 | gLuc sp-NanoLuc-15aa linker-ICAM-Nrxn3b-HA | pLX208-CMV | 125233 |
| P16 | gLuc sp-GS linker-HiBit-Flag-oβ2AR-TS-NNES-eLOV-TEVcs-Flag-Gal4-V5 | pAAV-CMV | 125234 |
| P17 | NanoLuc-15aa linker-βarrestin2-no HA-GS linker-TEVp | pAAV-CMV | 125235 |
| P18 | β2AR-NNES-NanoLuc-eLOV-TEVcs-Flag-Gal4-V5 | pAAV-CMV | 125236 |
| Plasmid number | Genotype | Reference |
|---|---|---|
| pSMH145 | pLIC-Tra His6-TEV-Ctf3; His6-TEV-Mcm16; His6-TEV-Mcm22 | ( |
| pSMH1269 | pFA6a- | This study |
| pSMH1577 | pFA6a- | This study |
| Protein complex | Plasmid name | Names used in this paper | Proteins expressed* | Vector | References |
|---|---|---|---|---|---|
| Mif2 | Sc_Mf_7 | Mif2 | Mif2-linker-(27-392)MBP-6XHis** | pLIC | This study |
| pGH52 | Mif2 | Mif2-linker-(27-392)MBP** | pLIC | This study | |
| Sc_Mf_5B | ΔN-Mif2 | (41-549)Mif2-linker-(27-392)MBP | pLIC | This study | |
| OA | pGH3 | OA | Ame1-6XHis, Okp1 | pST39 | This study |
| pGH4 | OA | Ame1-FLAG, Okp1 | pST39 | This study | |
| pGH42 | ΔN-OA | (21-324)Ame1-FLAG, Okp1 | pST39 | This study | |
| pGH15 | ΔN-OA | (21-324)Ame1-6XHis, Okp1 | pST39 | This study | |
| MIND | pGH63 | 2D-MIND | 6XHis-linker-Nsl1, S240D, S250D-Dsn1, Mtw1, Nnf1 | pST39 | This study |
| pGH62 | 2D-MIND | FLAG-Nsl1, S240D, S250D-Dsn1, Mtw1, Nnf1 | pST39 | This study | |
| pGH46 | MIND | Nsl1, FLAG-Dsn1, Mtw1, Nnf1 | pST39 | This study | |
| Ndc80c | pJT048 | Part of Ndc80c | Spc24-Flag, Spc25 | pRSFDuet | |
| pEM033 | Part of Ndc80c | Spc24-6XHis, Spc25 | pRSFDuet | ||
| Ndc80/Nuf2 | Part of Ndc80c | Nuf2, Ndc80 | pETDuet | ||
| Dam1c | pJT044 | Dam1c | Dad1, Duo1, Spc34-FLAG, Dam1, Hsk3 and | pST39 | |
| CI | pGH58 | CI | FLAG-Chl4, Iml3 | pLIC | This study |
| Histones | pScKl2 | Cse4-NCP | pLIC | ||
| pScKl4 | H3-NCP | H3, 6XHis-H2A, H2B. | pLIC | ||
| pScHT4 | Cse4(1-50) | 6XHis-MBP-(1-50)Cse4 | pLIC | This study |